jstjohn

John St. John (jstjohn)

3 years after

About John St. John

Summing up all of John St. John's repositories they have 12 own repositories and 6 contribute repositories .

John St. John follows 10 other users and is followed by 68 users.

Data for John St. John was last updated 3 years after.

John St. John use C, Java, C++, Shell, Scala, Perl, R, Python, D, Objective-C, TeX, Processing, Makefile, ...

Repository

IntroToStatisticalLearningR-

77 0

Work on Introduction to Statistical Learning

SeqPrep

69

Tool for stripping adaptors and/or merging paired reads with overlap into single reads.

SimSeq

28 0,0

An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of

KentLib

11

Subset of the kent source libraries (perhaps out of date) that are easily built and installed on OSX

re-pair

5

Program to re-do the pairing of fastq reads. This program is modified from http://code.google.com/

Jellyfish

4

Fork of the jellyfish kmer counter. Here is the description copied from their site: JELLYFISH is a t

mia

2

MIA is an reference guided assembler for DNA reads as generated by recent sequencing technologies. I

cscripts

1

Miscalanious C and C++ scripts.

gatk

1

GATK Official Release Repository

GrNMF

1

An R/Rcpp/RcppArmadillo implementation of Deng Cai's Non-negative Matrix Factorization on Manifold,

homebrew

1

The missing package manager for OS X.

KinectOrbit

1

A fork of http://www.arduinoandkinectprojects.com/kinectorbit with an attempt at upgrading to Proces

Contribute

docker-formula

docker-formula

56 0,0,0,0,0,0,0

Install and set up Docker

rmate

rmate

251

Edit files from an ssh session in TextMate

bamsurgeon

bamsurgeon

62 0,0

tools for adding mutations to existing .bam files, used for testing mutation callers

pybedtools

pybedtools

101 0,1

Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)

avocado

avocado

54 0

A Variant Caller, Distributed. Apache 2 licensed.

CS242

CS242

1

Group materials for CMPS 242