sjackman

Shaun Jackman (sjackman)

3 years after

About Shaun Jackman

Summing up all of Shaun Jackman's repositories they have 9 own repositories and 38 contribute repositories .

Shaun Jackman follows 15 other users and is followed by 207 users.

Data for Shaun Jackman was last updated 3 years after.

Shaun Jackman use C++, C, HTML, Makefile, R, Perl, Objective-C, Shell, CSS, Matlab, Ruby, ...

Repository

assembly-graph

9

Compare assembly graph file formats

open-science

7

:microscope: Open, reproducible science using Make, RMarkdown and Pandoc

abyss-scaffold-paper

4

Scaffolding a genome sequence assembly using ABySS

abyss-activity

2

ABySS learning activity

abyss-pipeline

2

Scaling ABySS to longer reads using spaced k-mers and Bloom filters

biomake

2

Makefile library for bioinformatics programs, with a focus on next-generation sequencing

assembly-slides

1

Genome sequence assembly slides

bamtools

1

C++ API & command-line toolkit for working with BAM data

bwa

1

Burrow-Wheeler Aligner

Contribute

brew

brew

7398 0,0,15,29,0,62,157,21

legacy-linuxbrew

legacy-linuxbrew

2369 0,-2,0,-2,-1,-1,0,0

:skull: This repository is defunct, because it has been split into https://github.com/Linuxbrew/brew

drake

drake

1207 0,0,1,0,1,0,2

Data workflow tool, like a "Make for data"

homebrew-bundle

homebrew-bundle

1354 0,6,0,2,2,0,4

:package: Bundler for non-Ruby dependencies from Homebrew

homebrew-science

homebrew-science

804 0,7,1,4,0

:microscope: Scientific formulae for the Homebrew package manager

homebrew-dupes

homebrew-dupes

581 0,0,1,0,2

:two_women_holding_hands: System duplicate formulae for the Homebrew package manager

beautiful-jekyll

beautiful-jekyll

384 0

Build a beautiful and simple website in literally minutes. Demo at http://deanattali.com/beautiful-j

bwa

bwa

336 0,0

Burrow-Wheeler Aligner for pairwise alignment between DNA sequences

purrr

purrr

325 0,1

Make your pure R function purrr with functional programming

awesome-pipeline

awesome-pipeline

335 0,0,1,2

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

sga

sga

152 0

de novo sequence assembler using string graphs

DWGSIM

DWGSIM

26

Whole Genome Simulator for Next-Generation Sequencing

genometools

genometools

72

GenomeTools genome analysis system.

dev-sea-el

dev-sea-el

10

command line access to devtools

prokka

prokka

73

:zap: :aquarius: Rapid prokaryotic genome annotation

homebrew-xorg

homebrew-xorg

4 0

:heavy_multiplication_x: X.Org implementation of the X Window System

GFA-spec

GFA-spec

2

Graphical Fragment Assembly (GFA) Format Specification

homebrew-science

homebrew-science

2

Scientific formulae for the Homebrew package manager

bowtie2

bowtie2

87

A fast and sensitive gapped read aligner

homebrew-science

homebrew-science

1

Scientific formulae for the Homebrew package manager

genometools-scripts

genometools-scripts

1

GenomeTools userscripts.

libbwa

libbwa

1

Shared library of Burrows-Wheeler Aligner (BWA)

brew

brew

1

:beer: The missing package manager for OS X

linuxbrew

linuxbrew

1

:penguin: A fork of Homebrew for Linux

brew

brew

418

:beer::penguin: The Homebrew package manager for Linux

ggplot2-tutorial

ggplot2-tutorial

128

Teaching materials for the R package ggplot2

nanopolish

nanopolish

60

Signal-level algorithms for MinION data

homebrew-core

homebrew-core

57

:beers::penguin: Core formulae for the Linuxbrew package manager

KAT

KAT

51

The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.

nanocorrect

nanocorrect

30

Experimental pipeline for correcting nanopore reads

dbgfm

dbgfm

17

FM-index representation of a de Bruijn graph

nanopore-paper-analysis

nanopore-paper-analysis

15

Code for nanopore paper

brew-evolution

brew-evolution

12

:fast_forward: Proposals for changes to the Homebrew package manager.

debruijn

debruijn

11

de Bruijn graph construction tool

bwa-pssm

bwa-pssm

8

A burrows-wheeler transform-based probabilistic short read mapper.

homebrew-science

homebrew-science

8

:microscope: Scientific formulae for the Homebrew package manager

biomake

biomake

7

Makefile library for bioinformatics programs, with a focus on next-generation sequencing