cognoma

Putting machine learning in the hands of cancer biologists

Project Cognoma

Putting machine learning in the hands of cancer biologists.

Project Cognoma is an open source project to create a webapp for analyzing cancer data. We’re a community-driven philanthropic project that began as a collaboration between the Greene Lab, DataPhilly, and Code for Philly. Our contributors are primarily based in the Philadelphia area, but anyone anywhere is welcome. This GitHub repository is the administrative and informational home of Cognoma.

Teams and Repositories

The project is composed of four teams with their own corresponding repositories:

Team Name Repositories Description
Cancer Data cancer-data, genes, figshare processing the underlying cancer data to the formats required for this project.
Machine Learning machine-learning, cognoml building classifiers to predict mutation status from gene expression data.
Backend core-service, task-service, ml-workers creating the infrastructure to power the webapp and glue the components together.
Frontend frontend, uiux, cognoma.github.io building the webapp that users interact with.

New Here?

If you are a new user and would like to get involved, please introduce yourself. Contributions are made through GitHub, so if you are unfamiliar with git or GitHub, check out the sandbox for a place to learn by doing.

Meetup Schedule

We hold project meetups. Our usual meeting spot is at Industrious (where CandiDate is located). The address is 230 S Broad St, Floor 17, Philadelphia.

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