This repository, under the umbrella of Project Cognoma (https://github.com/cognoma), holds the source code, under open source license, of a runnable django rest API, a component in the overall system specified in Project Cognoma.
Make sure to fork this repository on +GitHub first.
- Docker - tested with 1.12.1
- Docker Compose - tested with 1.8.0
Starting up the service
Sometimes the postgres image takes a while to load on first run and the Django server starts up first. If this happens just ctrl+C and rerun
The code in the repository is also mounted as a volume in the core-service container. This means you can edit code on your host machine, using your favorite editor, and the django server will automatically restart to reflect the code changes.
Running tests locally
Make sure the service is up first using
docker-compose up then run:
docker-compose exec core python manage.py test
Loading cancer static data
To load data, again with service up run:
docker-compose exec core bash python manage.py acquiredata python manage.py loaddata
To verify, run
curl http://localhost:8000/diseases/ to get a list of all diseases.
curl http://localhost:8000/samples?limit=10 to view data for 10 samples.